There is an ever-increasing volume of data on host genes that are modulated during HIV infection, influence disease susceptibility or carry genetic variants that impact HIV infection. This public resource supports queries on genome-wide genetic variation and gene expression profile across multiple phenotypes relevant to HIV biology.
Study name | Sample Count | Reference | Technology | Public |
---|---|---|---|---|
ICGH2 | 6315 | http://www.pnas.org/content/112/47/14658 | Illumina, 1kg imputed | Yes |
Study name | Sample Count | Reference | Technology | Public |
---|---|---|---|---|
EVS | 6503 | control data from evs.gs.washington.edu | see evs.gs.washington.edu | Yes |
Study name | Sample Count | Reference | Technology | Public |
---|---|---|---|---|
G2G | 1071 | Bartha et al. eLife 2013 | Illumina / Affymetrix GWAS chips. 1KG imputed | Yes |
Study name | Sample Count | Reference | Technology | Public |
---|---|---|---|---|
EXPR_VL_PlosPath | 127 | see PLoS Pathog 6(2): e1000781 | Illumina HumanWG-6 v3.0 expression beadchip | Yes |
Study name | Sample Count | Reference | Technology | Public |
---|---|---|---|---|
SHCS (Exome variations) | 391 | Unpublished | Illumina HiSeq2000 w/ Truseq 65Mb | Yes |